| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |
| aaMapper — Property in class org.jbei.components.SequenceAnnotator | |
| aaMapper — Property in class org.jbei.components.sequenceClasses.ContentHolder | |
| AAMapper — Class in package org.jbei.lib.mappers | |
| AAMapper(featuredSequence:org.jbei.lib:FeaturedSequence) — Constructor in class org.jbei.lib.mappers.AAMapper | |
| AAMapperEvent — Class in package org.jbei.lib.mappers | |
| AAMapperEvent(type) — Constructor in class org.jbei.lib.mappers.AAMapperEvent | |
| AA_MAPPER_UPDATED — Constant static property in class org.jbei.lib.mappers.AAMapperEvent | |
| activeGroup — Property in class org.jbei.registry.control.RestrictionEnzymeGroupManager | |
| activeTabIndex — Property in class org.jbei.lib.ui.dialogs.SimpleDialog | |
| actualHeight — Property in class org.jbei.components.sequenceClasses.SelectionHandle | |
| actualWidth — Property in class org.jbei.components.sequenceClasses.SelectionHandle | |
| addFeature(feature:org.jbei.bio.data:Feature, quiet) — Method in class org.jbei.lib.FeaturedSequence | |
| addFeatures(featuresToAdd, quiet) — Method in class org.jbei.lib.FeaturedSequence | |
| addRestrictionEnzyme(restrictionEnzyme:org.jbei.bio.data:RestrictionEnzyme) — Method in class org.jbei.bio.data.RestrictionEnzymeGroup | |
| addSubCommand(commandClassRef) — Method in class org.puremvc.as3.patterns.command.MacroCommand | |
| Add a SubCommand. | |
| adjustedSelectionVerticalPosition() — Method in class org.jbei.components.sequenceClasses.ContentHolder | |
| afterUpdate — Event in class org.jbei.components.SequenceAnnotator | |
| AFTER_UPDATE — Constant static property in class org.jbei.components.common.CommonEvent | |
| alias — Property in class org.jbei.registry.models.Entry | |
| Alignment — Class in package org.jbei.components.common | |
| Alignment(annotations, featuredSequence:org.jbei.lib:FeaturedSequence) — Constructor in class org.jbei.components.common.Alignment | |
| allCutSites — Property in class org.jbei.lib.mappers.RestrictionEnzymeMapper | |
| allCutSitesMap — Property in class org.jbei.lib.mappers.RestrictionEnzymeMapper | |
| AminoAcid — Class in package org.jbei.bio.data | |
| AminoAcid(name, name3, name1) — Constructor in class org.jbei.bio.data.AminoAcid | |
| aminoAcidFromBP(basePairs) — Method in class org.jbei.bio.utils.AminoAcidsHelper | |
| AminoAcidsHelper — Class in package org.jbei.bio.utils | |
| AminoAcidsHelper() — Constructor in class org.jbei.bio.utils.AminoAcidsHelper | |
| aminoAcidsTextRenderer — Property in class org.jbei.components.sequenceClasses.ContentHolder | |
| annotation — Property in class org.jbei.components.common.AnnotationRenderer | |
| AnnotationRenderer — Class in package org.jbei.components.common | |
| AnnotationRenderer(contentHolder:org.jbei.components.common:IContentHolder, annotation:org.jbei.bio.data:IAnnotation) — Constructor in class org.jbei.components.common.AnnotationRenderer | |
| APPLICATION_FAILURE — Constant static property in class org.jbei.registry.Notifications | |
| ApplicationMediator — Class in package org.jbei.registry.mediators | |
| ApplicationMediator(viewComponent) — Constructor in class org.jbei.registry.mediators.ApplicationMediator | |
| applicationVersion(majorVersion) — Static method in class org.jbei.lib.utils.SystemUtils | |
| ATOMIC_SYMBOLS — Constant static property in class org.jbei.bio.utils.SequenceUtils | |
| autoFind — Property in class org.jbei.registry.models.Feature | |
| averageRowHeight — Property in class org.jbei.components.sequenceClasses.ContentHolder | |
| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |