Documentation for classes includes syntax, usage information, and code samples for methods, properties, and event handlers and listeners for those APIs that belong to a specific class in ActionScript. The classes are listed alphabetically. If you are not sure to which class a certain method or property belongs, you can look it up in the Index.

	Class	Package	Description
	AAMapper	org.jbei.lib.mappers
	AAMapperEvent	org.jbei.lib.mappers
	Alignment	org.jbei.components.common
	AminoAcid	org.jbei.bio.data
	AminoAcidsHelper	org.jbei.bio.utils
	AnnotationRenderer	org.jbei.components.common
	ApplicationMediator	org.jbei.registry.mediators
	BioException	org.jbei.bio.data
	Caret	org.jbei.components.sequenceClasses
	Caret	org.jbei.components.railClasses
	Caret	org.jbei.components.pieClasses
	CaretEvent	org.jbei.components.common
	CommonEvent	org.jbei.components.common
	Constants	org.jbei.registry
	ContentHolder	org.jbei.components.sequenceClasses
	ContentHolder	org.jbei.components.railClasses
	ContentHolder	org.jbei.components.pieClasses
	Controller	org.puremvc.as3.core	A Singleton IController implementation.
	CutSite	org.jbei.bio.data
	CutSiteLabelBox	org.jbei.components.railClasses
	CutSiteLabelBox	org.jbei.components.pieClasses
	CutSiteRenderer	org.jbei.components.sequenceClasses
	CutSiteRenderer	org.jbei.components.railClasses
	CutSiteRenderer	org.jbei.components.pieClasses
	CutSitesBox	org.jbei.registry.view.dialogs.properties
	DNASequence	org.jbei.bio.data
	EditingEvent	org.jbei.components.common
	EntriesProxy	org.jbei.registry.proxies
	Entry	org.jbei.registry.models
	EntryInformationBox	org.jbei.registry.view.dialogs.properties
	ExternalMouseWheelSupport	org.hasseg.externalMouseWheel	Implements mouse wheel support for OS X.
	Facade	org.puremvc.as3.patterns.facade	A base Singleton IFacade implementation.
	Feature	org.jbei.bio.data
	Feature	org.jbei.registry.models
	FeaturedSequence	org.jbei.lib
	FeaturedSequenceEvent	org.jbei.lib
	FeaturedSequenceMemento	org.jbei.lib
	FeatureLabelBox	org.jbei.components.railClasses
	FeatureLabelBox	org.jbei.components.pieClasses
	FeatureNote	org.jbei.bio.data
	FeatureRenderer	org.jbei.components.sequenceClasses
	FeatureRenderer	org.jbei.components.railClasses
	FeatureRenderer	org.jbei.components.pieClasses
	FeaturesBox	org.jbei.registry.view.dialogs.properties
	FetchEntryCommand	org.jbei.registry.commands
	Finder	org.jbei.registry.utils
	FindPanel	org.jbei.registry.view.ui
	FindPanelMediator	org.jbei.registry.mediators
	FindUtils	org.jbei.lib
	GraphicUtils	org.jbei.components.common
	HighlightLayer	org.jbei.components.sequenceClasses
	HighlightLayer	org.jbei.components.railClasses
	HighlightLayer	org.jbei.components.pieClasses
	IAnnotation	org.jbei.bio.data
	ICommand	org.puremvc.as3.interfaces	The interface definition for a PureMVC Command.
	IContentHolder	org.jbei.components.common
	IController	org.puremvc.as3.interfaces	The interface definition for a PureMVC Controller.
	IFacade	org.puremvc.as3.interfaces	The interface definition for a PureMVC Facade.
	IMediator	org.puremvc.as3.interfaces	The interface definition for a PureMVC Mediator.
	IMemento	org.jbei.lib.common
	IModel	org.puremvc.as3.interfaces	The interface definition for a PureMVC Model.
	InitializationCommand	org.jbei.registry.commands
	INotification	org.puremvc.as3.interfaces	The interface definition for a PureMVC Notification.
	INotifier	org.puremvc.as3.interfaces	The interface definition for a PureMVC Notifier.
	IObserver	org.puremvc.as3.interfaces	The interface definition for a PureMVC Observer.
	IOriginator	org.jbei.lib.common
	IProxy	org.puremvc.as3.interfaces	The interface definition for a PureMVC Proxy.
	IView	org.puremvc.as3.interfaces	The interface definition for a PureMVC View.
	LabelBox	org.jbei.components.common
	Link	org.jbei.registry.models
	Logger	org.jbei.lib.utils
	LoggerEvent	org.jbei.lib.utils
	MacroCommand	org.puremvc.as3.patterns.command	A base ICommand implementation that executes other ICommands.
	MainControlBar	org.jbei.registry.view.ui
	MainControlBarMediator	org.jbei.registry.mediators
	MainPanel	org.jbei.registry.view.ui
	MainPanelMediator	org.jbei.registry.mediators
	Mediator	org.puremvc.as3.patterns.mediator	A base IMediator implementation.
	Model	org.puremvc.as3.core	A Singleton IModel implementation.
	Name	org.jbei.registry.models
	NameBox	org.jbei.components.railClasses
	NameBox	org.jbei.components.pieClasses
	Notification	org.puremvc.as3.patterns.observer	A base INotification implementation.
	Notifications	org.jbei.registry
	Notifier	org.puremvc.as3.patterns.observer	A Base INotifier implementation.
	Observer	org.puremvc.as3.patterns.observer	A base IObserver implementation.
	ORF	org.jbei.bio.data
	ORFMapper	org.jbei.lib.mappers
	ORFMapperEvent	org.jbei.lib.mappers
	ORFRenderer	org.jbei.components.sequenceClasses
	ORFRenderer	org.jbei.components.railClasses
	ORFRenderer	org.jbei.components.pieClasses
	ORFsBox	org.jbei.registry.view.dialogs.properties
	ORFUtils	org.jbei.bio.utils
	Part	org.jbei.registry.models
	PartNumber	org.jbei.registry.models
	Pie	org.jbei.components
	Plasmid	org.jbei.registry.models
	PrepareModelCommand	org.jbei.registry.commands
	PrepareViewCommand	org.jbei.registry.commands
	PrintableContent	org.jbei.components.common
	PrintFooter	org.jbei.registry.view.print
	PrintHeader	org.jbei.registry.view.print
	PrintView	org.jbei.registry.view.print
	PropertiesDialogForm	org.jbei.registry.view.dialogs
	Proxy	org.puremvc.as3.patterns.proxy	A base IProxy implementation.
	Rail	org.jbei.components
	RailBox	org.jbei.components.railClasses
	RailBox	org.jbei.components.pieClasses
	RestrictionEnzyme	org.jbei.bio.data
	RestrictionEnzymeGroup	org.jbei.bio.data
	RestrictionEnzymeGroupManager	org.jbei.registry.control
	RestrictionEnzymeMapper	org.jbei.lib.mappers
	RestrictionEnzymeMapperEvent	org.jbei.lib.mappers
	RestrictionEnzymesUtils	org.jbei.bio.utils
	Row	org.jbei.components.sequenceClasses
	RowData	org.jbei.components.sequenceClasses
	RowMapper	org.jbei.components.sequenceClasses
	Segment	org.jbei.bio.data
	SegmentUtils	org.jbei.bio.utils
	SelectionEvent	org.jbei.components.common
	SelectionHandle	org.jbei.components.sequenceClasses
	SelectionLayer	org.jbei.components.sequenceClasses
	SelectionLayer	org.jbei.components.railClasses
	SelectionLayer	org.jbei.components.pieClasses
	SelectionLayerEvent	org.jbei.components.sequenceClasses
	SelectionMarker	org.jbei.registry.models
	Sequence	org.jbei.registry.models
	SequenceAnnotator	org.jbei.components
	SequenceFeature	org.jbei.registry.models
	SequenceRenderer	org.jbei.components.sequenceClasses
	SequenceUtils	org.jbei.bio.utils
	SimpleCommand	org.puremvc.as3.patterns.command	A base ICommand implementation.
	SimpleDialog	org.jbei.lib.ui.dialogs
	SimpleDialogForm	org.jbei.lib.ui.dialogs
	StandaloneProxy	org.jbei.registry.proxies
	StandaloneUtils	org.jbei.registry.utils
	StatusBar	org.jbei.registry.view.ui
	StatusBarMediator	org.jbei.registry.mediators
	Strain	org.jbei.registry.models
	StringFormatter	org.jbei.lib.utils
	SystemUtils	org.jbei.lib.utils
	TextRenderer	org.jbei.components.common
	VectorViewer	Top Level
	View	org.puremvc.as3.core	A Singleton IView implementation.
	WireframeSelectionLayer	org.jbei.components.railClasses
	WireframeSelectionLayer	org.jbei.components.pieClasses